rs36949220 SNP Detail

Summary

• ID
  rs36949220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117235068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTATTAC AAACATTAAA
  AAAAAAAAAA AATTCTCACT TTGCCTCTAG TGTTAGGCAG CTAGGGGCTG CCACCTAGTG
  GTGCCAGTAA CAAACAACAA GCAAGGCCAA GACAGGAACA CCCATTGACC CACAGGAAGA
  CCAGAAAAGA GCCACCAGTC ACTGCAGCAG GCTGACAGAC ACTAAAACAG GTTCAGGCCC
  R
  ACTTGATCTC TATGCTTCCA ATGGAACAGT CTGCATGGAA GGATCCACAT CCCAGATTTG
  GCCAACAGGG AAAAAATATC TGTATTAACA TAAGCCTCAG AAAATAAGCC TCATGTGTCA
  AAGTGACATC AATACTGGGA TTAAAATTAT TAATCTATTA ACTATTAACA GATTAACTAT
  TAAACAGAGC ATATTTACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51186296	NES13826978	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36949220					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186296	NES13826978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117235068 () rs orientation: forward

Symbol	Name	Function Class
Rr618556	regulatory region 618556	585 bp distal
Rr618557	regulatory region 618557	within coordinates
Rr618558	regulatory region 618558	115 bp distal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron