rs36949411 SNP Detail

Summary

• ID
  rs36949411
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42268652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTGGTAG GGATGTGATG CCCAAGCCCT
  GGGAGGGGGC CATAGCAGCC AGAGTGACTC ATATTCAGAC TCTTGGCCCT CGGAATGGCA
  CCTTCCCAGA GTTGGGACTG TTGGTGATGG AGGTGACCTG GAGAAAGTGA CCAGGCTGGC
  S
  TGGTGAGGGC GCTCTCCATG TGGGTGTGGC CTGCTCTTCC TGCAGGCTTT GGTGTGACTC
  TGGTAGGATT GCTTCAATTC TCAGCTCTCT GGGAACTCTG TTTCTCCCTT CCCACTTAGC
  CCTTGACTTG GAGAAGGATG AGAGACTGTG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50818813	NES13546207	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G		C	G	C		C
ss325811990	CHEV_19_42354703	CHEVERUD	SCREENING_POP	f	SNP									C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36949411					SNP	C	C	C	C	C	C	C	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50818813	NES13546207	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42268652 () rs orientation: forward

Symbol	Name	Function Class
Gm34347	predicted gene, 34347	within coordinates
Mir3085	microRNA 3085	43 bp upstream