rs36949477 SNP Detail

Summary

• ID
  rs36949477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73965879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGAGAG GCTGTGCTCT
  AGGGCCAGCA AGAGGCAGGG ACAGGGAGAG GCCAAGACGA ACACCCTGGA GACAAACTAG
  ACTGATGACG GGGAGCTGCG GCAGGCTGCA CCACGCTGCA CAGCGGCAAA GGATGGTGAT
  GAGAGTAGGG GTCCTATGGT GGAGCTCTAG AGCTTCCGGA AGGAGCAGCC CGGTACAGAG
  R
  CAGAATGAGG AAGAAGCCAG GGAATGAGAG AACCTGACTC CTACCACCTC TCCATCCCTG
  GCACAGGTGG CCTCCACCTT GTGGGGAGGA AGGAAGGCGG ACTGAACGTG TAGGAGTGTG
  TCTCCGTGGA GGGTTCAGAA CTGGGGTCCA ACGAGAATGT CTCTGTTCAT CTCTTGGCAG
  CCTGGACAGG GCTCAGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276676	NES14517874	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36949477					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276676	NES14517874	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73965879 () rs orientation: forward

Symbol	Name	Function Class
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	1775 bp downstream
Tssr12216	transcription start site region 12216	1784 bp downstream