rs36950788 SNP Detail

Summary

• ID
  rs36950788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:28906932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG AGTCATTCTG TTGTTGATAT
  R
  AAAAGAGCAA CTCTGAAAAA GGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss50836127	NES14188926	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	G	G	G	A	G
ss147045128	ENSMUSSNP94615	ENSEMBL	ENSEMBL_Sanger	f	SNP							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36950788					SNP	A	A	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50836127	NES14188926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:28906932 () rs orientation: forward

Symbol	Name	Function Class
Gm9824	predicted pseudogene 9824	248 bp downstream
Gm30619	predicted gene, 30619	1195 bp downstream
Gm68174	predicted gene, 68174	within coordinates
Rr429457	regulatory region 429457	827 bp distal
Rr429458	regulatory region 429458	719 bp distal
Tssr92858	transcription start site region 92858	818 bp downstream
Tssr92859	transcription start site region 92859	175 bp downstream