rs36951397 SNP Detail

Summary

• ID
  rs36951397
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129307711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCTGTGG CCCTGAGTTA
  ACAAATGCAG CTTAGCATAC CCCACTTTGC TTGCCCCTCC CCACCACCAC TATAGCTGAC
  ACAATTTTGA CACAAATATG GTGCCTTACA AGATCTTACC GTTGACCACA TACACCCAGC
  TCTTCATAAA GCTTTATTTG ATCACCCTGA CTCAGAACCC TCCTTCCTCC TGCTTCAAAT
  M
  GAATGAATTT ATGCATAGCA AGTCCTCTAG AAACAAATCT AATCTATTTT TTTTTTCAGG
  AAAATATCCC AGCTGGTACT CTGTTTAAAT GTAATACATA TTTATCAATA GACTAATCTA
  GGAGGTAAAG CAGGTGGAGG GGTCAGGCTG AATAGCCAAT ACCACTATCA AGTGTTTTTA
  GTAGAAATTG ATCACTTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51417883	NES13721939	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36951397					SNP	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51417883	NES13721939	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129307711 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	within coordinates
Tssr63594	transcription start site region 63594	990 bp downstream
Tssr63595	transcription start site region 63595	1038 bp downstream
Tssr63596	transcription start site region 63596	1057 bp downstream