rs36951858 SNP Detail

Summary

• ID
  rs36951858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95940535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTG TCTTCCAAAA CATTGTGTAT
  K
  CTTCCTGTCT TCATGGGCGT TCATC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51136767	NES14338372	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	G	T	G		G	G	T	G		T
ss144995940	ENSMUSSNP688241	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
ss324490111	CHEV_13_96573982	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36951858					SNP	T	T	?	T	T	G	T	G	T	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51136767	NES14338372	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95940535 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	66 bp proximal
Rr285448	regulatory region 285448	1466 bp proximal