rs36952006 SNP Detail

Summary

• ID
  rs36952006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90919393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCGTGGG CGCCTAGCAC
  CTCGAGCCAA CCCACTCTCG CTTGAATACG CTCTTTTAAC AATGTTCTGG TAGCATGCTC
  CTGTCGCTGC CCTCTAAAGT CTGGGAACAT GTCACCCAGG ACTCGGCCCA CACTTTATTA
  AGCATCTACT ACTGCACGTC ACAAGTTTGC ACATACCTAA AAACCACTAC TTCCCGTCCA
  Y
  TCTGTAGCTT TGCGGATGAG TTTGCTCCAC CCTCCACCAA AAATCGCACT CTTAAAATGT
  CTGCAGCCTA ATAAAAAAAA GTTCGTTGTT GCTGAGCGAT AAATGCTAAT GAGACTTTCT
  CCTATTTAGA GCTGTGTGCC TACATTAAAA CTATAGTCCT TTTTTAAAGA TTTATTCTTG
  TTTATGTGTA TGAGTGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50888625	NES14226532	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36952006					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50888625	NES14226532	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90919393 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	761 bp upstream
Cpgi2099	CpG island 2099	within coordinates
Ikbip	IKBKB interacting protein	within coordinates
Rr402144	regulatory region 402144	377 bp downstream
Rr436976	regulatory region 436976	1113 bp distal
Rr436977	regulatory region 436977	464 bp distal
Tssr95222	transcription start site region 95222	1428 bp downstream
Tssr95223	transcription start site region 95223	503 bp downstream
Tssr95224	transcription start site region 95224	456 bp downstream
Tssr95225	transcription start site region 95225	428 bp downstream
Tssr98900	transcription start site region 98900	954 bp upstream
Tssr98901	transcription start site region 98901	870 bp upstream
Tssr98902	transcription start site region 98902	831 bp upstream
Tssr98903	transcription start site region 98903	758 bp upstream
Tssr98904	transcription start site region 98904	724 bp upstream