rs36952184 SNP Detail

Summary

• ID
  rs36952184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97804101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATCTAA CAGAGAGGAA
  GAAGCTGTAA ACCGCCCGGT TGATGGCTTT AATGGGGAGC CATGTACTTA GTGTGTTTCC
  CCAAGCAAGT TAGGATCCAT AGCTCACATG CACAAGGCTT CCTACTCTGC ATAGTGGGAG
  AGGAGAGAGA TGGACAGTTC AAAGGGACTT TATTGTCACA CGTGAAGGAA AGCACCAACC
  R
  TCCAAGTTTC CAGAGCTCTT GCTCCTGAAT CCTTATCTGT CACGTATCTC TAACTCCCAC
  GGGAAATGTT AAAGCCTTCT GGGAGACATT ATCAATAGTG ACTCTTGGGC TGAGTCTTAA
  GCCTCATTAA AGGCCCTCAG CCTTGTAATA GTGATCAGCC AGTATTGGAG AGCCACCAGG
  GAGTTCTCCA CAGCACTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51375363	NES13725652	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36952184					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375363	NES13725652	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97804101 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	1795 bp proximal
Tssr1945	transcription start site region 1945	173 bp upstream
Tssr57866	transcription start site region 57866	171 bp downstream
Tssr57867	transcription start site region 57867	94 bp upstream
Tssr57868	transcription start site region 57868	113 bp upstream
Tssr57869	transcription start site region 57869	139 bp upstream
Tssr57870	transcription start site region 57870	305 bp upstream
Tssr57871	transcription start site region 57871	325 bp upstream
Tssr57872	transcription start site region 57872	1099 bp upstream
Tssr57873	transcription start site region 57873	1150 bp upstream
Tssr57874	transcription start site region 57874	1160 bp upstream
Tssr57875	transcription start site region 57875	1177 bp upstream
Tssr57876	transcription start site region 57876	1212 bp upstream