rs36952326 SNP Detail

Summary

• ID
  rs36952326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134808450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATTTG CCTTTTGTGG
  AGCCAGGTCT TATATAGCCC AGGCTAGCCT CAAACTCTCT CAGTAGTAGA AGATGGTATT
  CAACTGTCTT CCTGCCTCTT CCACCTGCTA AGGGCTGGGA TGGCCAATGG GAACCTCATG
  TTTAGCATAC ATTTTGCCAA TATTTAAATT AAGCCATTGC TTCCCTATGC CTTTCAAAGT
  Y
  TAATTGTCAT AATCTGCTAT ATTCCTTGGA AGAGCTTTTT CCTTTAGGTA CCCTCTCCCT
  TTTTTCTCCA TCTAACAAAA TTTTGTTGCT CTTAAATTTG TTTTTTGTTT GTTTGTTTCA
  TATATCCTCA GACAGGTGTG GGGGAAATCC AATTTCTCTT GGCCGGTTGC TTTATTCTTT
  ATTAATGCTT CCCATTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51438857	NES14009623	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36952326					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51438857	NES14009623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134808450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	844 bp distal
Crebl2	cAMP responsive element binding protein-like 2	within coordinates
Gm67917	predicted gene, 67917	1392 bp upstream
Rr368197	regulatory region 368197	1223 bp downstream
Rr639728	regulatory region 639728	1403 bp distal
Rr639729	regulatory region 639729	1222 bp distal
Rr639730	regulatory region 639730	61 bp distal
Rr639731	regulatory region 639731	1005 bp distal
Tssr59250	transcription start site region 59250	1308 bp downstream
Tssr59251	transcription start site region 59251	1217 bp downstream
Tssr59252	transcription start site region 59252	1150 bp downstream
Tssr59253	transcription start site region 59253	713 bp downstream
Tssr59254	transcription start site region 59254	451 bp downstream