rs3695325 SNP Detail

Summary

• ID
  rs3695325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135798876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCGTACCAT GCCTGGGGTC TTCTATATCC
  TTCTGTTTAC AGTCTTCAGC AGCTGACATA AACCCCATGC AGCACAGGCA TTCTGGAAAC
  ATGAACTAAG TCTTTCCTGT TGAAATTGTC TTTTCTACAG CCTGGATGGC TGGGGATGTG
  Y
  TCACAATAAC GTTTCCACTT ATAACCTGGG TGACATTGTC ACATTTGTTC CCCCAAGCCC
  TGCTTATTTG TAAATTAGGA CAGCAAACCC TGAATCCTGG AGCACGGTGT TCACATGAAC
  GACAGTGGAA CAGGTACCTA TGAATACTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5071480	WI_WGS_1_136735742	WI	MOUSE	f	SNP	T							C
ss45086121	mCV23238900	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss49683191	NES12987239	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T		T	C	C	C		C
ss145548820	ENSMUSSNP5066755	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss319993917	CHEV_1_137767715	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3695325					SNP	T	T	C	C	C	C	C	C	C	C	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683191	NES12987239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135798876 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	988 bp downstream
Pkp1	plakophilin 1	257 bp downstream
Tssr13903	transcription start site region 13903	749 bp downstream