rs36953281 SNP Detail

Summary

• ID
  rs36953281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70702563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACAACTA GTGCCTCAGC
  CCTTCTACGT AAACACCAAA TCTATACTTT GTTCTTTGAT TCATCATTAA CTCCCACTCA
  TAGTTACGCT TAGCCACCAT ATTAGTTGTG GGACAGGCTC TCACCTCCTG TATTTAAGGG
  CCTTTTCCTC CCCCCCCAAA GGACCTTGTA TTCTCCTTCT TGAGTCTTTA TGTTTCCTAT
  Y
  GGCCCTCTTT TCACATAAGG GTGTCCTGGG ATGACAGTCT TAGAGCCCCT AGCATGATAA
  CAGGCAGTCC TCAGTCCTTT TCTGGACTCA GAGGGCCTCT GGCAACGCTG TCACTGTAGT
  GAGGAGACCA GCAAGCAGTT CTTCATGTTC ACAGTGAAGG CCAGTTGGCC TGTCGCCCCC
  TGAGTCCAGG CTGTCTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51530326	NES14627557	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36953281					SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530326	NES14627557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70702563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1743 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Tssr4470	transcription start site region 4470	1487 bp upstream
Tssr126423	transcription start site region 126423	1332 bp upstream
Tssr126424	transcription start site region 126424	1416 bp upstream
Tssr126425	transcription start site region 126425	1443 bp upstream
Tssr126426	transcription start site region 126426	1600 bp upstream
Tssr126427	transcription start site region 126427	1697 bp upstream
Tssr126428	transcription start site region 126428	1730 bp upstream