rs36955163 SNP Detail

Summary

• ID
  rs36955163
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60659916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC AGCTTGCCCA GTTTCTTGAG
  S
  CAGGCCAAGC AAGGACCAAA GCAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50418798	NES13463008	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	G	G	C	G	G	C		C	C	G	C		G
ss147246208	ENSMUSSNP2454798	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325639829	CHEV_18_60686498	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36955163					SNP	C	C	C	G	C	G	G	C	G	G	C	G	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418798	NES13463008	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60659916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	123 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	417 bp upstream
Gm58903	predicted gene, 58903	1578 bp downstream
Rr351670	regulatory region 351670	1875 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	610 bp downstream
Tssr153448	transcription start site region 153448	858 bp upstream
Tssr153449	transcription start site region 153449	765 bp upstream
Tssr153450	transcription start site region 153450	741 bp upstream