rs3695533 SNP Detail

Summary

• ID
  rs3695533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93005056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATC TGCATAGAGG GTGGGGCCAC
  Y
  GCTCCTCTGA GCATTCCTCC TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5071688	WI_WGS_1_93528685	WI	MOUSE	f	SNP		T	C
ss45171917	mCV24966602	ABI	CRAMUS_MOUSE	f	SNP	T		C	T
ss144956786	ENSMUSSNP4470406	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3695533					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93005056 () rs orientation: forward

Symbol	Name	Function Class
Kif1a	kinesin family member 1A	within coordinates
Rr35385	regulatory region 35385	1346 bp proximal
Rr371712	regulatory region 371712	1535 bp upstream
Tssr13001	transcription start site region 13001	1126 bp upstream
Tssr13002	transcription start site region 13002	1096 bp upstream
Tssr13003	transcription start site region 13003	1079 bp upstream