rs36955448 SNP Detail

Summary

• ID
  rs36955448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26412709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATATAA ATCTATATAT
  TCTCCAATAG ATTCAATTTT CTAGTCATGC CTTTTCCTGC AATTTGGAAA TCTTGATTTC
  CTGGACTCCT TCCAAGGTAA GGCAGTTAAA CAGCAACAAC AGCAACAAAA ATCACCTTGC
  CCTCGATTCA CTTGAGTGAA AAGCAGTGTA ACTGTTTATC TTAAGTCTCT CTTAGTTCAG
  Y
  AACTGCCTCT TCTAGCAACC TTCACCCAGC CCTTTTGGTA GGCAAGACAG TTTCCATGGT
  GACTATGTTG TTTCTACTGG ATTGCAGTAG CCCTGCAGAG GAAAAACTCT TTGTCAGTCC
  CTGAGAGGCG AAAGAGAAGA ATCAGGTACC ATTTCTCTTC CTTTCCTCCT TTTTGTGTTT
  TTTGTTTTCT GTTTTTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51506130	NES14640642	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36955448					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51506130	NES14640642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26412709 () rs orientation: forward

Symbol	Name	Function Class
Dnah12	dynein, axonemal, heavy chain 12	1720 bp upstream
Gm62888	predicted gene, 62888	within coordinates
Rr489385	regulatory region 489385	494 bp distal
Tssr124706	transcription start site region 124706	57 bp upstream
Tssr124707	transcription start site region 124707	107 bp upstream
Tssr124708	transcription start site region 124708	1700 bp upstream
Tssr124709	transcription start site region 124709	1713 bp upstream
Tssr124710	transcription start site region 124710	1731 bp upstream