rs3695631 SNP Detail

Summary

• ID
  rs3695631
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3400599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATA GAGCAACACA GCTTTAGTTA
  R
  AAGCAAGCTG GCTCACTTGT GTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5071787	WI_WGS_6_3093288	WI	MOUSE	f	SNP			A	G
ss132926272	ENSMUSSNP2675369	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss321724848	CHEV_6_3350599	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3695631					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3400599 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	599 bp distal
Rr146113	regulatory region 146113	998 bp distal
Rr146114	regulatory region 146114	599 bp distal
Rr399551	regulatory region 399551	905 bp downstream
Samd9l	sterile alpha motif domain containing 9-like	1141 bp upstream
Tssr59689	transcription start site region 59689	1284 bp upstream
Tssr59690	transcription start site region 59690	1135 bp upstream
Tssr59691	transcription start site region 59691	1025 bp upstream