rs36956551 SNP Detail

Summary

• ID
  rs36956551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82120025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTGCTG GAGACCACAG
  ATAATAAGGC AGCGGGGAGA CGATATGCAC TTTCCACTGC CTCGTGGCTT TCTGCCCTGG
  GTCAGACCCG GTAAAGATAA TGCACCAGGC AGAGCTCTAG GAAGGACTTA CCTACCCAGA
  AGACTGGAAG GTTCTCTCAA GAGCTGTCAG ATCTGCTTCT GCTAACTTCT GGGTGGCTTA
  Y
  CTTGGCCACT GCCAGCAGCA CCATGGCTTA ATGGCTGTAG GACTTTGGTC TCTGAGTCCT
  GACTCTGTAA GATGTTCCCT CCCTACAGTT GCCATTGAAC CCATATTGAC CGCTGGGTTC
  TCTGGCTCTC AGTGCAGCCC TTCCTCTCTG AGCAGCAGGC TCTCAAACTG GTTTCTTTCT
  CAGATTCTCC TCTTGAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51027271	NES14388232	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36956551					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51027271	NES14388232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82120025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4836	CpG island 4836	214 bp distal
Gm30799	predicted gene, 30799	within coordinates
Rr257877	regulatory region 257877	225 bp distal
Rr268520	regulatory region 268520	within coordinates
Tssr3883	transcription start site region 3883	130 bp upstream