rs3695704 SNP Detail

Summary

• ID
  rs3695704
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  107
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72438538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCTGGTG CCAGAGGCTT TGGCTGCTGT CTTCTACACC
  CAGGCGCTTA GCCTTCCTGA CCAGCCCCAC CTAGAAAAGC TAATTCTTCT GCTCTTCTAA
  S
  AGGAATGATT TGTTGGAGGC AGGGAGTCTC ACTCTCAGCC AGCAAAGCTG TCTATGAATG
  GGAAGGGGGC GAAATGGTGG GCAGTCTCTG GCTGGGGTGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5071860	WI_WGS_9_73167256	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3695704					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72438538 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	212 bp proximal
Rfx7	regulatory factor X, 7	984 bp upstream
Rr401508	regulatory region 401508	598 bp downstream
Rr401509	regulatory region 401509	363 bp upstream
Rr682766	regulatory region 682766	780 bp distal
Rr682767	regulatory region 682767	835 bp distal
Rr682768	regulatory region 682768	279 bp distal
Rr682769	regulatory region 682769	85 bp distal
Rr682770	regulatory region 682770	494 bp proximal
Rr682771	regulatory region 682771	695 bp proximal
Tssr86008	transcription start site region 86008	472 bp upstream
Tssr86009	transcription start site region 86009	677 bp upstream
Tssr86010	transcription start site region 86010	928 bp upstream
Tssr86011	transcription start site region 86011	958 bp upstream
Tssr86012	transcription start site region 86012	1531 bp upstream