rs3695739 SNP Detail

Summary

• ID
  rs3695739
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:105280344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAAAAT ACAAAACAGA
  ACAGGAGAGT AATGTTTCAA ACCAAATGTC TTCCAGGGGA CATTTAAAAC ATAAAGCTAG
  CATGCAACCC AACAACACCA CCAATCCAAT AAGCCCAGCA AATATGAGGA AGAACTTGAA
  CATATGTTTC TGAAATGAAA GCACACAGTG GATGATAAGT TTATGAACAG ACAGTGAACA
  K
  CATCAATGCT CAGGGGAATG GAGTCAAACT GAGAAGGACA TCATCACCAT CTTAGGACCA
  CTGCCACTAA AAAGACAATA GATAACAATT TTTGATGAAG GAAGTTTAAA AACACACCCT
  GTGCACTATT AGACAGAACA ACAATTGGTA CAAACACTCT GGGGTCCGTT TGAACAATTC
  CTAAAACAAT AAAAGTAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
ss5071895	WI_WGS_5_102770612	WI	MOUSE	f	SNP		G	T
ss45773721	mCV23375046	ABI	CRAMUS_MOUSE	f	SNP	G		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
rs3695739					SNP	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105280344 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	Intron
Tssr1571	transcription start site region 1571	692 bp upstream
Tssr52267	transcription start site region 52267	1146 bp upstream
Tssr52268	transcription start site region 52268	1092 bp upstream
Tssr52269	transcription start site region 52269	1017 bp upstream
Tssr52270	transcription start site region 52270	855 bp upstream
Tssr52271	transcription start site region 52271	737 bp upstream
Tssr52272	transcription start site region 52272	674 bp upstream
Tssr52273	transcription start site region 52273	596 bp upstream
Tssr52274	transcription start site region 52274	565 bp upstream
Tssr52275	transcription start site region 52275	540 bp upstream
Tssr52276	transcription start site region 52276	506 bp upstream
Tssr52277	transcription start site region 52277	490 bp upstream
Tssr52278	transcription start site region 52278	463 bp upstream
Tssr52279	transcription start site region 52279	401 bp upstream
Tssr52280	transcription start site region 52280	350 bp upstream
Tssr52281	transcription start site region 52281	319 bp upstream
Tssr52282	transcription start site region 52282	302 bp upstream
Tssr52283	transcription start site region 52283	216 bp upstream
Tssr52284	transcription start site region 52284	159 bp upstream
Tssr52285	transcription start site region 52285	127 bp upstream
Tssr52286	transcription start site region 52286	97 bp upstream
Tssr52287	transcription start site region 52287	82 bp upstream
Tssr52288	transcription start site region 52288	68 bp upstream
Tssr52289	transcription start site region 52289	3 bp downstream
Tssr52290	transcription start site region 52290	110 bp downstream
Tssr52291	transcription start site region 52291	450 bp downstream
Tssr52292	transcription start site region 52292	929 bp downstream
Tssr52293	transcription start site region 52293	1099 bp downstream
Tssr52294	transcription start site region 52294	1196 bp downstream
Tssr52295	transcription start site region 52295	1514 bp downstream