rs36957793 SNP Detail

Summary

• ID
  rs36957793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27752025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCCCCTT TGTCTTTTCG
  CAGAACTTTG TGTTGAGCAC AAAGTTTCAC AGAGAGTTGA GTCCTTTTAG GCGAGGTGTG
  AATCAGGGTG TATTTTTTAT TTTTATTTTT TATAGGCACC GATACAGACC TAAAGGCTCT
  GGGAAACGTT TATTTTCTCT CTTGCCCGTC CCTTTCTGGA TGAACAGGTT AGCTGGGTAG
  Y
  AATAGCCAGT ACTGTTTGTA ATGCACTCTG ATCCACTTCT CACTGTGGTC TGCGAAGTGT
  CCGTTGGCAG ACCAGGTAGT TCCCGTTGTC TTTGAAGAGG AAGGGGTTTC CTTAGAGTGT
  AGCATTTGCT TCTTAACTGA AAGAAAGCAG TGTCAGGTCC CCAAAGCCAG CTGGCCCTTG
  TCAGATTTTT GTTGCTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51947114	NES14964422	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36957793					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51947114	NES14964422	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27752025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	370 bp distal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	within coordinates
Rr186444	regulatory region 186444	within coordinates
Rr186445	regulatory region 186445	1175 bp proximal
Tssr76776	transcription start site region 76776	1665 bp downstream
Tssr76777	transcription start site region 76777	1627 bp downstream
Tssr76778	transcription start site region 76778	1579 bp downstream
Tssr76779	transcription start site region 76779	1535 bp downstream
Tssr76780	transcription start site region 76780	1488 bp downstream
Tssr76781	transcription start site region 76781	564 bp downstream
Tssr76782	transcription start site region 76782	749 bp upstream