rs36957961 SNP Detail

Summary

• ID
  rs36957961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30171958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAGAGCA TCAGAGTTGG
  TGTGTAAGGA GGACTGGCAG GGGCACAGGA TGTCCTCCTG GGTGAGTGTG TATCCTACAT
  CCTCTGCCAG GTCTCCCTCC CCTAGCCCTA CTCCCCTTAG GCATGTCTTG TCTCTTTGAA
  GAATCATCCC TCCCTTGGCC AGGTATTGGG GTCGGGGGTC TTTCCCTGGG CTCTTGCTCT
  R
  TAGTCAGACC TATATGTGCC TCTTCCCCCT GCCCCCCCCC CCCAGCCTAC CATTCTCAGT
  ACCAGAGCTC CCTAGAGGTG AGTGGTTCGG GTGGAGTCTT TAGGGATCTT TTGCTAACAT
  TCAGCAACTG TCACCATCAA CCCCTACACA TCGAATCTAG AGTCTCTGTT GCGAATCTTC
  CCACCAGCGA TTGGCCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51574674	NES14856882	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36957961					SNP	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51574674	NES14856882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30171958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	957 bp proximal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rncr4	retina expressed non-coding RNA 4	934 bp upstream
Rr146072	regulatory region 146072	1557 bp distal
Rr146073	regulatory region 146073	within coordinates
Rr146074	regulatory region 146074	242 bp proximal
Tssr55327	transcription start site region 55327	901 bp upstream