rs36958151 SNP Detail

Summary

• ID
  rs36958151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22196183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTCTTA TTAAAAGATC
  TCCATGGTAT CTTGTTTGTT TTGTATCTTC TGTGGCCTCT TTGTAAGGTC ATTATTATGC
  TTCCTTTGTA ATTGAAGTTT GGAGAGACAG TGAGTTTTTC TGGCTCCTCA TCATTAGTCT
  TGAAATGAGG TGACTAGCTG TCAGCTCACT TGTGGTGTCT CTCTCTAGTT CTCAGCTCTG
  Y
  TTACTGTACA GTCTAATATT AAAAGAAGCC ATCCTCTGCT CCACTTCTTA CAGGATAATA
  ATTAGAATAA GAAGGACACT CTCTGCCCCT CTTAACAGCC AGTGGCTCTC CACCCCTCTG
  GTCACTTGGT AGAGGCTTTG AAGCTCAAGT GATGTTCAGG TCTTACGCAA GATCAGTGGT
  TTTCAACCTT CTCAATGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51433244	NES14434293	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36958151					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51433244	NES14434293	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22196183 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574212	regulatory region 574212			1975 bp distal
Rr574213	regulatory region 574213			1185 bp proximal
Rr574214	regulatory region 574214			1426 bp proximal
Tbl1xr1	transducin (beta)-like 1X-linked receptor 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant