rs36958800 SNP Detail

Summary

• ID
  rs36958800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45825733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTTGTTT TCAAGAATTA
  CTTATCTAAA ATTTGGAATC CAAGAACCTT ATGGTGTACA TTGTTTAGTT TTTGTTATTT
  TCTTAAGCTT ATCAAAGACA CAAATTTATT CCTATATGTA TTTGTTCTTT CTCACAGAAT
  AAAAGTAAGA GTCAAGAACT ATGTAAGCTT TACAATGAGA TTATGCTGTA TGAATTTAAT
  R
  TAGCATATTG GAAAAGTTCC ACGATTACGA TGTCCAAAGC ATACCAAATC CATACAACAT
  TCGTTACTAA AATCCACAAC TCTAATCAAA ACATAGTCAT ACTGACCTCT GGTGGTCAGA
  TTCCTTATAT TTCACTGATA CTGAAATAAC TAGATAAAAT ACTCATGAGA CATTTTTTTT
  TTAATCAACA AAACAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51715832	NES14748600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36958800					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715832	NES14748600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45825733 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	311 bp downstream
Cpgi15841	CpG island 15841	854 bp proximal
Ncapg	non-SMC condensin I complex, subunit G	1528 bp upstream
Rr367838	regulatory region 367838	1191 bp upstream
Rr611093	regulatory region 611093	within coordinates
Rr611094	regulatory region 611094	99 bp proximal
Rr611095	regulatory region 611095	504 bp proximal
Rr611096	regulatory region 611096	1038 bp proximal
Rr611097	regulatory region 611097	1279 bp proximal
Tssr46141	transcription start site region 46141	1493 bp upstream
Tssr46142	transcription start site region 46142	1516 bp upstream
Tssr46143	transcription start site region 46143	1613 bp upstream
Tssr46144	transcription start site region 46144	1842 bp upstream