rs36959775 SNP Detail

Summary

• ID
  rs36959775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24866487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATAATACT TTCTGTCCCA
  TGTCTTTTAA GATGTCATCT TACAAATATT GAAATCTTGC TATTTGTAGA TAGACATACC
  TGGCCACAAA TGTATAAATT AAGTAAGCTT GCTCAGCTTT GGAGATGTAT TTAGGGAAAC
  TAATTCCACC TGAAATGCCA ATTCTTCACA CGAATGAGAA AGCTATTACT GGTGTTAAAC
  Y
  AAGCTTATAT ATGAAAAATA GAAAGCTATA ACTTTGTTTG TTTGTTTGTT TGTTTTTCGA
  GACAGGTTTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCA CTCTGTAGAC CAGGCTGGCT
  TTGAACTCAG AAATCTGCCT TCCTCTGCCT CCCAAGTGCT GGTATTAAAG GCGTGCACCA
  CCACCACCCC ACTACTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50652967	NES14021666	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36959775					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50652967	NES14021666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24866487 () rs orientation: forward

Symbol	Name	Function Class
Gm48255	predicted gene, 48255	1892 bp downstream
Gm68954	predicted gene, 68954	1453 bp upstream
Rr675442	regulatory region 675442	1269 bp proximal
Rr675443	regulatory region 675443	1464 bp proximal