rs36959989 SNP Detail

Summary

• ID
  rs36959989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11174081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAAAAGT AAAGAGGCAC
  ACTGTTACCT CACATTTCAG TTGTCCCAAG ACCCAAGGAT CCAGTTTCAC CCTATCAGGC
  CTAGGCACAG GCTGAAGAGA AGGATCACCG TGGATGGTGC TCTCAGCGCT AGATCTGGCT
  GCATAGCCAT CAGAGGCAGC AGCGCGCAGT CTAGCTCCCA GGTGGTTGTC AAGCTCCTCA
  R
  GCCGCCGGGT TGTCAAGGGC AACAGCCCTC TCTTAGGGCA GAGGGATGAG AACCAGTGCG
  CAGACTCACT GGGGCCTGCG GGCCACGCCC TGGTCCCTCA CTTCGATCCT CTTCTGGAGT
  TTCTAGTAAT GGCTTCCCTG GACATGGCTG GAACACTGCC TCTTCAGGGA TGCTTCTCCT
  AAGATAGAAT GGCCGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50597162	NES13640011	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36959989					SNP	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50597162	NES13640011	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11174081 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	100 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	25 bp upstream
Tssr158300	transcription start site region 158300	within coordinates