rs36961393 SNP Detail

Summary

• ID
  rs36961393
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122361274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTCTAG AGGAACCAGC
  ACCTCCTGAG TATAGGAGTA TGTTATTCTG TGCAAATGAA AATAGACACT CTCTCGCATA
  CTTATTAGAT GTCAGATACT AAAGATGCCA CTGACTAAAT TTTAATAACT AAAAATCCTC
  CCTTAAAGTC CTGGTGAAAC CAATTACAAA GAAAATGAAA ACAGAGTATT AATATACCTG
  M
  GAAGTCTAAA TCAGCATTGG TGATTAAAAA TCATTGACAC TTAAATAAAA ATAGAATCTA
  AGTTTTAAAT ATTCACTTTA ACAGGAAAAC ATAAAAACAT AGCAAATATA TGCACGAGCT
  TTCAAAATGC CAAAGATTTG CATAGTATGA AGAAACACCA CAGTATCTTG CATGAACTTG
  TACATTTTCA GTCTTCAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51614426	NES14662934	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36961393					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51614426	NES14662934	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122361274 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1l	formin binding protein 1-like	within coordinates
Gm43569	predicted gene 43569	within coordinates
Rr375679	regulatory region 375679	1483 bp downstream
Tssr31506	transcription start site region 31506	886 bp downstream
Tssr35455	transcription start site region 35455	1160 bp downstream