rs36961412 SNP Detail

Summary

• ID
  rs36961412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190802761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGAGGAG ATTGGCTGGG
  TGCCATTGTC CCGAGAAGTG ACCACAGCAG GCTTTAGATT GTGCCATTGT CTTTGCCTTT
  AGTTTTTTAA GTCAGCAGAC TTTTAAGTGT GACCTTCCAG TATTGTCTCC TTCAGTAATG
  CTTTGGGGCA TTAAAGGCCT GCACTTGACC TTAGAGTCCT GCTGTGACAG GAAAAAGAAG
  Y
  CCTTGAGGAT GTTCACTTTC TCACACATTC GGCCTTAAAG AGCCCTTCCC ACACTGCAGA
  GCAGAGAAAG CGTTATCTGC CGTTGACTGT GTCATGCCTC CCTCTAACTT ACCTCCTTGA
  CCTGCTAGAG AAACTCTGGA ACTAGTCAGC TCGAGGAGGG GGGACAGGCC TGGAGAGCAT
  GAGTGTGCCC TGTCACTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51423888	NES14444280	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36961412					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51423888	NES14444280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190802761 () rs orientation: forward

Symbol	Name	Function Class
Nsl1	NSL1, MIS12 kinetochore complex component	Intron
Rr426039	regulatory region 426039	1912 bp distal
Rr426040	regulatory region 426040	992 bp proximal
Rr426041	regulatory region 426041	1804 bp proximal
Tssr10723	transcription start site region 10723	1365 bp downstream