rs36961450 SNP Detail

Summary

• ID
  rs36961450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57172933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCTGAG TACCAGCTCT
  AGAAACGGTC TCCTCCAGGG AGGCCCTCTC ATCTTCATCC CTCCTCCTTC CCCTGCCAAG
  AGAGGAAGAT GTCAGCGTGG GTAGGTGGTG GAGCCAAGAG CTCCGGTACG GAGCAGGTTC
  TATGCCAGAC ACTTAATAGT GTCTCACTTA AGCCTTCCAA CCCGATAAAG TAAGAATCTG
  Y
  GAAAGAAGCA AACTCACCAG GTATGACCAT ACATGGTGAC AGATGGCTGT AATCCCAGCA
  CTTGGGGGGT TCAGGTAGCA GGATCAGGGG TTCAAGGAAG ACCCCCTTCT CTCCCTCTAC
  CCCTAAAAGT CAAGTGAACT GGGTTTGCCC TTCTGAATTG TGTGACTTAA GCAACACCTT
  CACTTGAGTT TGCACATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss52020755	NES15041777	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs36961450					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020755	NES15041777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57172933 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	within coordinates
Rr679625	regulatory region 679625	195 bp distal
Rr679626	regulatory region 679626	1635 bp proximal
Tssr89773	transcription start site region 89773	139 bp downstream
Tssr89774	transcription start site region 89774	157 bp downstream