rs36961725 SNP Detail

Summary

• ID
  rs36961725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55239551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCGGGC AGGAAGTGGT
  GCTAATGCCT GACTTTGATA TTGGTCTCCT GATCAGGTAC ATTAAAAAAA TAAGCCTTTC
  TATACTATAG GCCTGGTACA GCGAAAGCAC TCAAGCTTAA CAGACCATCA GTGGCTAGCT
  ACCCATTGGC CAGTGGGACA GCATTACAGA AGGACCAAAC ACAGAGCTGG ACATCTGTGA
  Y
  CCTGCCTCAG GCCTAGGTTG TCTGCTACCT GATTATAAGG TTTTAGTGTC CTCTTGAATA
  GGGCTCATTG TCCTCTCCTG AGAAGTAAAA TCTTGCCTGG CCTACAGAGC CTCTTATCTC
  TATGATGATA CCTTTGTGGT CTTAATGATT TAGTAACAGT GTAGTGATGC GCACCTTCCA
  CATGGATAGA AGGAAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51221534	NES14297436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36961725					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221534	NES14297436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55239551 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	747 bp upstream
Rr363563	regulatory region 363563	649 bp proximal
Rr363564	regulatory region 363564	1849 bp proximal
Tssr5558	transcription start site region 5558	715 bp upstream
Tssr157068	transcription start site region 157068	779 bp upstream
Tssr157069	transcription start site region 157069	806 bp upstream
Tssr157070	transcription start site region 157070	833 bp upstream