rs3696187 SNP Detail

Summary

• ID
  rs3696187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113612806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG TGAAGGTTGT TGAAGGAGAG
  Y
  GATTGGGAAG AAGGGAGACC AAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5072345	WI_WGS_9_114906268	WI	MOUSE	f	SNP					T			C
ss46338343	mCV23323115	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss61225221	NES16842758	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	T		C	T	T	C		C
ss136989668	ENSMUSSNP2664807	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss323201079	CHEV_9_113692856	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3696187					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225221	NES16842758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113612806 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr192898	regulatory region 192898	1806 bp distal
Rr192899	regulatory region 192899	within coordinates
Rr202689	regulatory region 202689	853 bp distal
Rr207498	regulatory region 207498	within coordinates