rs36961985 SNP Detail

Summary

• ID
  rs36961985
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101204536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAATAGC AGCACTGTGT
  TCCAGATCTG GGAGCAAGCA AGCCCTCCCC CAACACCTCC GGCTAATTAA AGTTATCTGG
  CCAGTGGCCT GTCATGTAGT GCCATACCTA TCCTCAACTG AACTTTGATC TTGCATTTCC
  TTAGCTCATT TGGATTTTCT TCCTGCTGGA ACAACCTCTT TCTTTTGTCC CATAGATTAC
  W
  CGTGAAGGGT TGGAAGAATG TGGAGGTCAT TTGTTGCAGA GGGCTTAGGA GAGAAGCGGC
  TGGCCCCGGT CTCAGGGTTG GAGGGTGACA GGAAGAGTAG AAGCCATCGG AGTCTGGTTC
  AGTCTCTTTC TACTCTGTGG ATAAGTTTTC TTTGAGTTTT GGGTAAGACA ACTTTGGAAG
  TTGAGCCTGT AGCATAATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss50784757	NES14209262	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		A	A		T
ss323149598	CHEV_9_101229667	CHEVERUD	SCREENING_POP	f	SNP						A			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs36961985					SNP	T	T	T	T	T	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50784757	NES14209262	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101204536 () rs orientation: forward

Symbol	Name	Function Class
Rr198413	regulatory region 198413	1065 bp proximal
Rr202333	regulatory region 202333	1706 bp distal
Rr202334	regulatory region 202334	1204 bp distal
Rr206996	regulatory region 206996	within coordinates