rs3696264 SNP Detail

Summary

• ID
  rs3696264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44437611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG CAGCAGGGAG CCACATGACT
  Y
  GACTCACCAG GTCATCCATA TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5072423	WI_WGS_9_44780056	WI	MOUSE	f	SNP						C	T
ss47688818	NES11324612	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C		C	C	T	C		C	C	C		T
ss322941042	CHEV_9_44334397	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3696264					SNP	C	C	T	C	C	C	T	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688818	NES11324612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44437611 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr200338	regulatory region 200338	1789 bp proximal
Rr203858	regulatory region 203858	1396 bp distal
Rr206318	regulatory region 206318	410 bp distal
Rr401337	regulatory region 401337	176 bp upstream
Tssr89167	transcription start site region 89167	342 bp upstream
Tssr89168	transcription start site region 89168	83 bp downstream
Tssr89169	transcription start site region 89169	110 bp downstream
Tssr89170	transcription start site region 89170	155 bp downstream
Tssr89171	transcription start site region 89171	190 bp downstream