rs36962758 SNP Detail

Summary

• ID
  rs36962758
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66813066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTCTGA ATTTCTTCAG
  CTCGGACTGG AATGAATGTC ATGTTTACCT CATGGTCAGA GAGTTCCTGA ACAGGCTCCC
  TGAGCTAATC CTTGGAAAGA ACTGGTGATA GTGCCTCACA CAGACACAGA GCTCATCCCA
  CAGACATGTA CACTGCAGAC TTCACTCCTA ATGACCCCAA ACTGTTACAA ATGAAGGCCC
  W
  ACACAGGTCA ACAGGAAACC AATGGTATGT CCATTCAGTG GAATATTACA CAGTACTGAA
  TCTATTATGG TGTCCAAAAA AACATGAGTA GATTCTAAAA TAATCATGCT AAGGGACAGA
  AGCCATGGCA AAGAGAGGAG TACAGGAGTC ACTTGATGGA CAAAAAGCAG AGCAGAGGGT
  GCCTGGGAGG AACGAGAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51706599	NES14571298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36962758					SNP	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51706599	NES14571298	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66813066 () rs orientation: forward

Symbol	Name	Function Class
Ndrg1	N-myc downstream regulated gene 1	Intron
Rr503612	regulatory region 503612	197 bp distal
Tssr134596	transcription start site region 134596	988 bp upstream
Tssr134597	transcription start site region 134597	1896 bp downstream