rs3696292 SNP Detail

Summary

• ID
  rs3696292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173106402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGAGAGA AGAGGTGGTG
  GTGGGCGGGG GGCAGCTAAA GCCTGGACTT GGGTCCTGCT TCTGCCTAGC TCCAGAATTT
  TTAGGATAGG CTCATCAGCA CCCTGCCCGC CTGCTCCTTG GGGTGGTGAT TCCCTCTCAG
  CTCTGTCCTA GCACCTGTGG GTCACAGTGA CCCCTTTTCC TTCAGTTGCA ACCCAACACC
  R
  GACCGTTCCT GTTCTCTCCT GCTCAGAGCC ATGGGGATCA CTGCCCGCTG GCCCGGTGAC
  CCTTCTTGGA AGGGCGTGGC AGAAGGGGAA GGCTTCCCAG CCGGCCAAAA GGGATACACA
  CACACACACA GAGACCCAGC TGGAGAAGTC TGAGAGGCCA GAGGTGGAGA GAGGCCTCAA
  ATCAGACACA CCCCTGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5072451	WI_WGS_2_174494221	WI	MOUSE	f	SNP	G					A
ss37824556	NES08702950	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A		G	A	A	A		A	A	G		A
ss45373948	mCV23267586	ABI	CRAMUS_MOUSE	f	SNP	G	G				A		A
ss148331722	ENSMUSSNP4674318	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss320622150	CHEV_2_173090110	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3696292					SNP	G	G	A	A	A	A	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824556	NES08702950	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173106402 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	within coordinates
Rr571916	regulatory region 571916	325 bp proximal
Rr571917	regulatory region 571917	1157 bp proximal
Tssr22050	transcription start site region 22050	441 bp upstream
Tssr27982	transcription start site region 27982	1325 bp downstream