rs36963027 SNP Detail

Summary

• ID
  rs36963027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45825796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTTTTT GTTATTTTCT
  TAAGCTTATC AAAGACACAA ATTTATTCCT ATATGTATTT GTTCTTTCTC ACAGAATAAA
  AGTAAGAGTC AAGAACTATG TAAGCTTTAC AATGAGATTA TGCTGTATGA ATTTAATGTA
  GCATATTGGA AAAGTTCCAC GATTACGATG TCCAAAGCAT ACCAAATCCA TACAACATTC
  R
  TTACTAAAAT CCACAACTCT AATCAAAACA TAGTCATACT GACCTCTGGT GGTCAGATTC
  CTTATATTTC ACTGATACTG AAATAACTAG ATAAAATACT CATGAGACAT TTTTTTTTTA
  ATCAACAAAA CAATAAAGGC AGCAAGCACC TAAAATGAAA GGTCACAGAT TGTCACAAAA
  TATTAATATG TTCTAAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51715826	NES14748604	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36963027					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715826	NES14748604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45825796 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	248 bp downstream
Cpgi15841	CpG island 15841	791 bp proximal
Ncapg	non-SMC condensin I complex, subunit G	1465 bp upstream
Rr367838	regulatory region 367838	1128 bp upstream
Rr611093	regulatory region 611093	within coordinates
Rr611094	regulatory region 611094	36 bp proximal
Rr611095	regulatory region 611095	441 bp proximal
Rr611096	regulatory region 611096	975 bp proximal
Rr611097	regulatory region 611097	1216 bp proximal
Tssr46141	transcription start site region 46141	1430 bp upstream
Tssr46142	transcription start site region 46142	1453 bp upstream
Tssr46143	transcription start site region 46143	1550 bp upstream
Tssr46144	transcription start site region 46144	1779 bp upstream