rs36964206 SNP Detail

Summary

• ID
  rs36964206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69621340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAACAAA GTTAGACTCG
  TAAAGGCCTC TTCCTTGCAC AGACGGGAAT CTACAGCAGA AAGGCCATTT ACAAATCACA
  ACATATGCAG CTTCGTGAGC CACATAGGTT GAACAGAATG AAACAGAAAG CTACACCAAA
  GACAACTTCC TGGGAAAGCC GTCTCACTCA GCTTCTGCCG TGTTTTCTCC AGCAAGGACC
  Y
  TCCTAATGGG TAGACTAGTT CTGAAAATCA AATTTAATTA AAAATTTTTA AAATCTGAGG
  GCTGGCTGCA ATTCAAAACC GAGTCTTTTC ACAGCCACCT TACTAGACGC TGTTTAAAGA
  CAAAGATGTG TAATGCCACC TACAGGGCAC CTTTGGAACT ACAGTCCTAC TTCTATGTCC
  CACACTGGGT TAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51017757	NES14400709	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	C	C	C	T	C	C	T
ss137859508	ENSMUSSNP2661026	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36964206					SNP	T	T	C	C	C	T	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017757	NES14400709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69621340 () rs orientation: forward

Symbol	Name	Function Class
Rr257073	regulatory region 257073	1140 bp distal
Rr257074	regulatory region 257074	61 bp proximal
Rr403327	regulatory region 403327	within coordinates