rs36964405 SNP Detail

Summary

• ID
  rs36964405
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4839755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCATATA TCCCTTCTTC
  CGTGCTGGCC ATCAACCATA AGAAGTACTG TTATCCACAC AATTTTGCTG GCAAGATAAC
  TGAAGCTCAC AAGAATTCCT GGCTAACTTG GTTTATGCAC CAAGGACCAA GCCCTTCAAA
  ACTCCTTCCT TAATCCACTT TGCTCCCATG TTCAACACTG GCTTGTGACT GTACACTCTC
  W
  GCAACTTCAC TCTGTGTATA ATATACCAAA AAGTAAGAGC TTGTCAGCTG TGTATCCTTA
  ACACAGTTAG GATACCATAA TATCCCCCTA GGAAACTTGA GATCAACATC TGAAACAAAG
  TTTTGGGGGG ATTGAAGAAA TTCGGTGTGA AAGCAGCTGC TACAACTTGA GATTTGGCTG
  TCTTTCCTTC GGTTTTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	MOLF/EiJ	PWD/PhJ
ss50908950	NES13484810	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	MOLF/EiJ	PWD/PhJ
rs36964405					SNP	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908950	NES13484810	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4839755 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	1599 bp upstream
Rr407421	regulatory region 407421	862 bp distal
Rr407422	regulatory region 407422	969 bp distal
Rr407423	regulatory region 407423	426 bp proximal
Rr407424	regulatory region 407424	523 bp proximal
Tssr5799	transcription start site region 5799	1562 bp upstream