rs36964579 SNP Detail

Summary

• ID
  rs36964579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26414589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCGTGTT TAGAATTCCG
  GCCCACTCAT CTCAACTGCC ATTCTTTAAC TACTACCATA CTTGGTAAGA GAATCTGGAC
  AGCTATGGAT TTTGTTTACA GTACCGATGT GTAAGATACA CTGAATATAT TCAGGCTTGA
  TCTCATACAA TAATGGCTGT ATGAACTTTT TCTTTTCAGA GTATAGTGTG TTTTAATACT
  Y
  AGGAGACCAA GATGTCAGAT CCTAACAAAA CTGCCATTGC AGCAGAAAAG GAAGCTTTGA
  ACTTGAAGTT GCCCCCCATT GTTCAACCCC CCAAAAACAT AGGGGTCGAC ACACCAAAAC
  AGAGTGAGCT GCTAAAGTAC AGACGGTCTA AGGAGCAGCA GAAGAAGATC AATCAGTTAG
  TGTAAGTAGC ATGTTAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51506126	NES14640581	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36964579					SNP	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51506126	NES14640581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26414589 () rs orientation: forward

Symbol	Name	Function Class
Dnah12	dynein, axonemal, heavy chain 12	within coordinates
Gm62888	predicted gene, 62888	161 bp upstream
Tssr124706	transcription start site region 124706	1798 bp downstream
Tssr124707	transcription start site region 124707	1763 bp downstream
Tssr124708	transcription start site region 124708	172 bp downstream
Tssr124709	transcription start site region 124709	157 bp downstream
Tssr124710	transcription start site region 124710	138 bp downstream