rs36964684 SNP Detail

Summary

• ID
  rs36964684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117233143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGTGCTC GGGGAAGAGA
  TCGGACGCCT ACCTCGTTGG CTCCCACTGA GCTGATCACA CAGCTCAGCT TCTGGTTGTC
  CTTAGATTCC AGGTAGATGG CCTGGCTCTT GTGGTACCTG CCAAAACCAG GACACAAACA
  AAATATCAGG ACGGAGGGAG GGGCAGGAAA ACAAACACCA CAGTGACAGA AACCATCACT
  Y
  CAACAGTCAC AGCAACACAC AACCGAGGAA GAGCACGGGC TTCAGAAGGA GACAGACAGA
  CAGGCAGACA GGCAGGCTTC CACCCTGACA CTGGGTGTCA ATCATTTTCT CCCTTGTTTG
  AGACAGGGTC TCTCACTTAA CCTACAACTC TGATCCTGCT AGACTGCTGG CAGGTGAGCC
  CCAGGGAGCC TCGGCCGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51186322	NES13827118	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36964684					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186322	NES13827118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117233143 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	317 bp distal
Rr618555	regulatory region 618555	454 bp distal
Rr618556	regulatory region 618556	1319 bp proximal
Rr618557	regulatory region 618557	1684 bp proximal
Rr618558	regulatory region 618558	1789 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron