rs36965043 SNP Detail

Summary

• ID
  rs36965043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88531031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTCTCA ACAAGCTGCG
  AGCCTCCAAT GGGACTTGGC ATCCTGTGCA GGCTAGTGTG TGATGGATCC GTCCTTCCCT
  CTTCCCAGGG TCAGTCTGTG ACTCCCCTCC CGTTCCACCC CACCCTTACC TCTCCCCACG
  CTCACTCACC AGGGTGCCCA AAAGGCAAGT GGCTGGTGCC AAGAGAACCA GAACTGAGCC
  Y
  GTGTTCCCAA CACCAGAGGC AGGGCAGGCA AGGGGGAGAC AGGCACTTCC CACTGGCCCA
  CGGGTGACCT CAGCCACGGG ATGCATCTCC ACCCGCCCTG CCTGGCCAGC CCAGGAAGGC
  TGGGTTGAGG GTGTGCAGCT CCTGCTGTGG GCTTGGCGGG GAATCCAGCT AGTGGGGGAG
  AGGAAGAGGC TTGGGAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50598729	NES14052516	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36965043					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598729	NES14052516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88531031 () rs orientation: forward

Symbol	Name	Function Class
Tssr82324	transcription start site region 82324	1 bp upstream
Tssr82325	transcription start site region 82325	8 bp downstream
Zfp423	zinc finger protein 423	within coordinates