rs36965162 SNP Detail

Summary

• ID
  rs36965162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70440757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAGGAA TGGCCTCCTG
  GGGAAGTTTC GGAGGCTCTT AGGAGCTTCC TTCAGACTGT CTTCCCTCCT TATATTGTCG
  ATCCACGGCT CCCCCCACCT GGCCTGCTAG TGTCCCATCA ACTGCTGGCC CATCAGTGTC
  CTTTTTTCCT CGCTGTTCAC TCACCCTTGT CCCCCGGGAG GATGAGCCTA TATGGGTTCG
  R
  AGGTGACCAG GGATGAAATC ATCCAGGCTG AGCCCAGCAG GGAGGCCTTG CATGCTTGGG
  TCAAGGTTGG AGGACGCAGG ATGTGCCAGC TGCTCCTTCG TGTGTACTCT GCAGAGAAGG
  AGGAAGGAAG GGAAAGCCCT GCTCGGCTGG ACTGCCTGGG ACCTCTTGAC TCAACCCACT
  GGTGGGGGAG GAAGGTAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51532225	NES14630561	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36965162					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532225	NES14630561	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70440757 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm26908	predicted gene, 26908			111 bp upstream
Rr494880	regulatory region 494880			801 bp proximal
Rr494881	regulatory region 494881			1305 bp proximal
Rr494882	regulatory region 494882			1929 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			86 bp upstream
Tssr126404	transcription start site region 126404			1863 bp upstream
Tssr126405	transcription start site region 126405			1917 bp upstream
Tssr126406	transcription start site region 126406			1936 bp upstream
Tssr129550	transcription start site region 129550			100 bp downstream
Tssr129551	transcription start site region 129551			147 bp downstream
Tssr129552	transcription start site region 129552			159 bp downstream