rs36965716 SNP Detail

Summary

• ID
  rs36965716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6094785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG TCGGCAGGGT GTTCTCCTGC
  R
  TCTCGGTTTT CTTCAGCTTG CCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575724	NES13653319	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36965716					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575724	NES13653319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6094785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	1459 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	within coordinates
Gm59262	predicted gene, 59262	1347 bp upstream
Rr370438	regulatory region 370438	1553 bp upstream
Rr405816	regulatory region 405816	274 bp downstream
Rr405817	regulatory region 405817	968 bp upstream
Rr543275	regulatory region 543275	315 bp distal
Rr543276	regulatory region 543276	451 bp distal
Rr543277	regulatory region 543277	1030 bp proximal
Rr543278	regulatory region 543278	1304 bp proximal
Rr543279	regulatory region 543279	1918 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	1821 bp upstream
Tssr154538	transcription start site region 154538	1349 bp upstream
Tssr154539	transcription start site region 154539	1874 bp upstream
Tssr157816	transcription start site region 157816	135 bp downstream