rs3696615 SNP Detail

Summary

• ID
  rs3696615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135799108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAAACCCT GAATCCTGGA GCACGGTGTT
  CACATGAACG ACAGTGGAAC AGGTACCTAT GAATACTCTT GGGTGACATT TTCAACCCTT
  GCCTGATACA TAGTCAGTAA GCCAAGATGT TGGAGAGAAA GCCCTTCATC CCTTAATAGT
  R
  TCCCAAATAA TACAAGGCTT GAGAAACCTT CAAAGAAATA CTAGTAGTTT ATTGATTTCC
  TATATTTTGA CAAAGCAAAT ACATGGTGTA TCATACAAGG AAACTGGGCC CGTTCAGCAC
  AAGGTTCTCA TACAAGATGG AGCAAGGACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5072777	WI_WGS_1_136735974	WI	MOUSE	f	SNP	A			G
ss45123928	mCV23238890	ABI	CRAMUS_MOUSE	f	SNP		A	G	G	G
ss145548824	ENSMUSSNP6009813	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
ss319993918	CHEV_1_137767947	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3696615					SNP	A	A	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135799108 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	1220 bp downstream
Pkp1	plakophilin 1	25 bp downstream
Tssr13903	transcription start site region 13903	517 bp downstream