rs36967896 SNP Detail

Summary

• ID
  rs36967896
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187995008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGTAAG CCTCTACAAC
  ACACAATCAT CCATAAATAC ACAAACTGAT TGTCCTATAG GTCGATGAGC GTGATTTGTC
  CAATAACGTT CAGATCTTTG TCATATTTTT TGACTCTAAG TTGTGTGGTT CATAATGGAC
  TTTGAGAAGT TCTCCATTGT TTTTGTAGGG GGCATCAGAT CTTCATGCTT AGAATAAACT
  M
  TCGATTTCTT GTGTGTTGTT CACCAGGCAC CGGCTTCGAC TCATGTTTCT GTCCTCCCTC
  AGGACACCCT TGCTCTGCCT TCCCTGTGAC AGTGTGTCTA CAGTCTCCCC AAGATGAAAC
  ATCTCAGGGA TCAAGTGCCT TTCCAGGATT TCTGGTGAAC AGTGCAGCCC TGGATCTTAA
  TTTAGGAATG CTTCATTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51416330	NES14451687	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36967896					SNP	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51416330	NES14451687	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187995008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	406 bp proximal
Tssr368	transcription start site region 368	88 bp upstream
Tssr10680	transcription start site region 10680	819 bp downstream
Tssr10681	transcription start site region 10681	783 bp downstream
Ush2a	usherin	27 bp upstream