rs36968202 SNP Detail

Summary

• ID
  rs36968202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68471586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGATAG GGTTCAGGAG
  ATCCTCTGAG AACTTAGGTG TCAAAAAAAT CAGACATGAA AAGAGAAGTT GTACTTTGCA
  TAAAAATGGA AGCTTCACAG AAACACTGTA AGCCGAGCGT GACAGAATGT GAGTAAGTGG
  AAGAAGCCTG TGAAGACACC AGGCTTGTAT TAGAGGGACA GAATTTGAGG CACGAGGGGC
  Y
  CCGAGGCCAA GCAGGGTCAC GACCCCAGTA TACCTGTGTC TATCCAGCCA TTTCCGTAGA
  TGCACTTGGT TTTGGTACGG TAGGCACACT CTGTGCTGTG GTATACGCTT ATGTTCTTGA
  GATCATAATA ACAACGGCAA ACAAACCTGT CTTACAGTAA ATCCGATGCC AAGAAGTGGG
  GGCATTCTCT TCCAGCAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50460622	NES13443524	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36968202					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460622	NES13443524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68471586 () rs orientation: forward

Symbol	Name	Function Class
A030001D16Rik	RIKEN cDNA A030001D16 gene	1857 bp upstream
Cpgi10187	CpG island 10187	909 bp distal
Mc5r	melanocortin 5 receptor	within coordinates
Rr393851	regulatory region 393851	1325 bp downstream
Tssr151786	transcription start site region 151786	998 bp downstream
Tssr151787	transcription start site region 151787	969 bp downstream
Tssr151788	transcription start site region 151788	1878 bp upstream