rs36972407 SNP Detail

Summary

• ID
  rs36972407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60236083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGAAAT AAGGTCCAGG
  AGAGGGGAAT GGCTAAGCTA AGGCCACACT TTCTCTGTGG GATTCTAAGG AAGTAAGAGC
  ATGTAGAGAG ATGCTTTCAG AGGAAGGTTC CAGTAGGAAG GGGGCTCCTT GCCTGGTCTT
  CAGGAGTATT CCCTCTGGAA CCGACGGTTC TTGCTGGCTG GCAGCAGGGA ATCTGGTAGG
  Y
  GGCTGGGCTT GCCTCAAGCT CCTGGGCCTG GTCTCCAGCT CTCTAGTGTC ACAGCCTGCC
  ACTAGACTGT CTCTGGCGTC TGTGCAGAAG TGGCCCTGGG GCCTGTAGCC TCACAGCTTC
  TCTGGGTTCT GAGCTGGTGG GATGCAGGCC TTAGCTGGAA TTACCCTAGC CTTACTGGGG
  CCAAGTATAG AGAGCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50866208	NES14170274	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36972407					SNP	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866208	NES14170274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60236083 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr215449	regulatory region 215449	1883 bp distal
Rr223077	regulatory region 223077	1453 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	532 bp downstream
Tssr93634	transcription start site region 93634	499 bp downstream
Tssr93635	transcription start site region 93635	428 bp downstream
Tssr93636	transcription start site region 93636	449 bp upstream