rs36972874 SNP Detail

Summary

• ID
  rs36972874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTAGGTT TAGACACGTG
  TGCCGGTCCA CGCGGTAGGA CCTCCGTTTC TACCTGCTTT GTACTTCCTC CAGTCACACA
  ATGCCGCCGC CTTCGGACAT CGTGAAGGTG GCCATAGAAT GGCCTGGCGC CTACCCTAAA
  CTCATGGAGA TTGACCAGGT GAGTAAGGCA GGTAGGACTG GAGAGCTCAC AACAGTTTTC
  Y
  TCTTCGCACT GAGTGGTTGC AGATTTTGAA TAGCTTCATG TCCTTACTCT AAGGGGCTCT
  GAAATCCGGG CAGTACTTAC TACAGTGTGG TCTGTGTATA TACAATGGCA GTGGATGGGA
  CTTTTATAGT CTTGCCCCAT CTGCTGGATT CTGTCAATAC TGGGTTCCTA TCTGAAGCAG
  TAGTGATAGC AGCTGGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076111	NES14368657	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36972874					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076111	NES14368657	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	31 bp distal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	1317 bp distal
Rr270988	regulatory region 270988	517 bp distal
Rr270989	regulatory region 270989	84 bp proximal
Rr281054	regulatory region 281054	within coordinates
Rr403595	regulatory region 403595	183 bp downstream
Tssr118580	transcription start site region 118580	558 bp downstream
Tssr118581	transcription start site region 118581	536 bp downstream
Tssr118582	transcription start site region 118582	246 bp downstream
Tssr118583	transcription start site region 118583	183 bp downstream
Tssr118584	transcription start site region 118584	137 bp downstream
Tssr118585	transcription start site region 118585	120 bp downstream