rs36973521 SNP Detail

Summary

• ID
  rs36973521
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTTTAA AATAGCATAT
  ACCCCTACAG GTCAATAAGA CATCTGAGGT AACAGCTGTC TGTCATGTCC TGCATTGACA
  CATGGGAAGC TAAGACATCC TGCCATTCAT TATGCAACCT CCTTGAGGCT GTGAATAAAA
  AGGAAGTGCA TCTGGTGAAG GGCCAAGGTC CGGTTCACCC TAAGCGATGT CAGAGTATCA
  S
  TCCCTTTCCT GACCCTTCAC ATCCGGCTGC TGGCTTGCAC ATGATTCACT ATCACTCTAT
  TTTAACTCCC GGTGGCAGAG AAAGGAGAAA GCTCTAGTCA TCAGGTGTCA GGCCTGGCAA
  AGACCTGAAA AGCTCTTCCG GCTTGGACCA GGAGGATGGT CGGTGTCTCT TAACTTCAGA
  GTCGGTCAGG GATCTACATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677569	NES14010732	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36973521					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677569	NES14010732	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	1326 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676840	regulatory region 676840	1439 bp distal
Rr676841	regulatory region 676841	1837 bp distal
Rr676842	regulatory region 676842	988 bp proximal
Rr676843	regulatory region 676843	1359 bp proximal
Tssr84450	transcription start site region 84450	1783 bp downstream
Tssr84451	transcription start site region 84451	35 bp downstream
Tssr84452	transcription start site region 84452	within coordinates
Tssr84453	transcription start site region 84453	731 bp upstream
Tssr88938	transcription start site region 88938	1916 bp upstream
Tssr88939	transcription start site region 88939	1881 bp upstream
Tssr88940	transcription start site region 88940	1849 bp upstream
Tssr88941	transcription start site region 88941	1560 bp upstream
Tssr88942	transcription start site region 88942	1545 bp upstream
Tssr88943	transcription start site region 88943	1517 bp upstream
Tssr88944	transcription start site region 88944	1469 bp upstream
Tssr88945	transcription start site region 88945	1452 bp upstream
Tssr88946	transcription start site region 88946	1356 bp upstream
Tssr88947	transcription start site region 88947	1327 bp upstream
Tssr88948	transcription start site region 88948	1297 bp upstream
Tssr88949	transcription start site region 88949	208 bp upstream