rs36973843 SNP Detail

Summary

• ID
  rs36973843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45827811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCACCCG TCTTCTCCAT
  CCTCATCCCG CCAGGGGATG CGGGGAGTTA TCCGTTATCC TCAGTTCCTC AGTGACTTGT
  TGATCTGCGC AGGGAATCTC AGACGCCTTT ATTTCCTTGG AGGTCTCTGG TTCATCTCAG
  GCAATCGATG AAGTTGTTTC AACCAACTCC TAAGCTTTAA AACCACCTTC ATTTCACCAG
  Y
  TAGGGAAACC ATAAGCACCC AGTCTTTCCC GTACATGGCA ATTGTGTGTC GAGTGTAGCG
  GCGGGGAATT ACTGGACAGC GAATGTGAGG AAGATACATT GTTTTGGAGT TCACGGAAAG
  TTAAGGACAT ATAAAAGTGA TCAAGGGTAG GGAGCAAAAT GTGTAAGTTA TGACAGAAGG
  AAATTGACGG ATGCTAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51715742	NES14748558	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36973843					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715742	NES14748558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45827811 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	761 bp upstream
Cpgi15841	CpG island 15841	within coordinates
Ncapg	non-SMC condensin I complex, subunit G	within coordinates
Rr367838	regulatory region 367838	586 bp downstream
Rr611093	regulatory region 611093	1842 bp distal
Rr611094	regulatory region 611094	1958 bp distal
Rr611095	regulatory region 611095	1553 bp distal
Rr611096	regulatory region 611096	540 bp distal
Rr611097	regulatory region 611097	778 bp distal
Tssr46141	transcription start site region 46141	568 bp downstream
Tssr46142	transcription start site region 46142	524 bp downstream
Tssr46143	transcription start site region 46143	463 bp downstream
Tssr46144	transcription start site region 46144	225 bp downstream