rs36973980 SNP Detail

Summary

• ID
  rs36973980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86056760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGAGGG AGGAGTAAAA
  GAGGGGAGAG AAAACATGGC TTACCATGCT TGGTTGGGGG CATGTCAGTG AGTTTGCATT
  TGGTTTCTAA AAGCAAATTC ATAATTATAG TTGGATACTT GGCAAGGATG AAAGAAAGGA
  ATGTCTGCCA TTTTTGTAGC AGGATCCCAA TTTGACTAAG TTTTGACTGA AAGAACAGGA
  Y
  TTAAAGATGC CAGTTCAGTG CCCCTGTTGA ATAACACTGG GTTTCAGCAG GACCATGGCA
  GGCAGGGACC GGTTTGCAGT CTCGGGACAG AGACTCCAGC AGCCAGTTGG GCAGTGGTCA
  GGAGACAGGA AGGGTTTTAC AGGCCACCCC CCATGGATGG CAAAGACAAA GGGACATAAA
  TCTAGAAGGT TTCTGTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51756559	NES14801165	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36973980					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51756559	NES14801165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86056760 () rs orientation: forward

Symbol	Name	Function Class
Add2	adducin 2	Intron
Rr633329	regulatory region 633329	1684 bp distal
Rr633330	regulatory region 633330	471 bp distal
Rr633331	regulatory region 633331	107 bp distal
Tssr57448	transcription start site region 57448	1715 bp downstream
Tssr57449	transcription start site region 57449	1689 bp downstream