rs36973996 SNP Detail

Summary

• ID
  rs36973996
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86056338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG GTTAAAAGAA GAATGAAAAA
  W
  ATTAAGGGAA AATGAGTGAC AGCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51756562	NES14801164	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	A	T		A	A	A		A
ss133354663	ENSMUSSNP6276863	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
ss321845688	CHEV_6_86029350	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36973996					SNP	A	A	T	A	T	A	A	T	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51756562	NES14801164	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86056338 () rs orientation: forward

Symbol	Name	Function Class
Add2	adducin 2	Intron
Rr633329	regulatory region 633329	1262 bp distal
Rr633330	regulatory region 633330	49 bp distal
Rr633331	regulatory region 633331	55 bp proximal
Tssr57448	transcription start site region 57448	1293 bp downstream
Tssr57449	transcription start site region 57449	1267 bp downstream